runGcdh
timings:
# 51 hours
user system elapsed
184872.684 1347.476 186386.675
gcdhReport
timings:
system.time(gcdh_report <- getQuery(gcdhReport(gcdh_res), "select * from gcdh_report"))
user system elapsed
291.780 79.300 371.669
PLINK files info:
bedinfo height_filtered_iprzbZ
bed file path: height_filtered_iprzbZ.bed
bim file path: height_filtered_iprzbZ.bim
fam file path: height_filtered_iprzbZ.fam
List of shifted bed files:
[]
......
Number of SNPs: 594937
Number of individuals: 10675
Each SNP uses 2669 bytes
All SNPs use 1587886853 bytes in total
bed file: height_filtered_iprzbZ.bed
bim file: height_filtered_iprzbZ.bim
fam file: height_filtered_iprzbZ.fam
Number of SNPs: 594937
Number of obs: 10675
Bytes / SNP: 2669
Size of bed file agrees with bim and fam files.
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